Biochemistry Laboratories Building
Pike Lab Space
top half of glass bottles - decorative hero image


This is an accordion element with a series of buttons that open and close related content panels.

Data Analysis Tools

QuEST – ChIP-seq data analysis package

HOMER – Hypergeometric Optimization of Motif Enrichment — ChIP-seq and Motif Discovery

Bowtie – An ultrafast memory-efficient short read aligner

Tophat – A spliced read mapper for RNA-Seq

Cufflinks – Transcript assembly, differential expression, and differential regulation for RNA-Seq

UCSC Genome Browser

Ensembl Genome Browser

Primer-BLAST – primer designing tool for qPCR and qRT-PCR

DAVID – Database for Annotation, Visulatization and Integrated Discovery – Gene annotation

SEQanswers — Forum for next gen sequencing users

University of Wisconsin Helpful Links

Madison, Wisconsin Links